In Ozstar terminal interface write the following command to use mamba
ml mamba
By default, Conda places environments in the home directory in ~/.conda. As you create new environments, the home directory disk quota will be exhausted very quickly. To resolve this issue, we recommend changing where conda environments are created:
conda config --env --prepend envs_dirs /path/to/my/project/on/fred/.conda/envs conda config --env --prepend pkgs_dirs /path/to/my/project/on/fred/.conda/pkgs
Finally, create e new environment
conda create -n <env-name>
If you have a .yml file then you can use the following command
conda env create -f environment.yml
More about yml file
If you want to use apptainer, in that case, first you have to load the apptainer module by running the following command
ml apptainer
If you want to access the container shell
apptainer shell your_apptainer.sif
if you want to create an instance of the apptainer then
apptainer instance start your-apptainer.sif your_instance_name
you can check all the instances using
apptainer instance list
To access an instance shell, run
apptainer shell instance://your_instance_name
to stop an instance
apptainer instance stop your_instance_name
To bind
apptainer instance start --bind $HOME/mydata:/data your_apptainer.sif your_instance_name